1. 陈庆锋*，Chen YPP，Zhang CQ. Interval-Based Similarity for Classifying Conserved RNA Secondary Structures, IEEE Intelligent Systems, 31(3): 78-85，2016，SCI(二区)，影响因子2.34
2. 陈庆锋*，罗海琼，Chengqi Zhang，Yi-Ping Phoebe Chen ,Bioinformatics in protein kinases regulatory network and drug discovery Mathematical Biosciences，2015，262：147-156。
3. 陈庆锋*，Phoebe Chen，Chengqi Zhang，Effective Classification ofConserved RNA Secondary Structures using Interval Based Similarity，IEEE，Intelligent Systems，2015，99。
4. 陈庆锋，Chen, Ming，Protein Systems Biology: Method, Regulation, and Networks, Current Protein & Peptide Science, 2014, 15(6): 519-521.
5. 陈庆锋*，Hu, Xiaoyan，Chen, Baoshan，Effective Identification of  egative Regulation Patterns of Protein Kinases，IEEE Transactions on NanoBioscience，2013，12（2）：98-105。
6. 陈庆锋*， Lan W, Wang JX.Mining Featured Patterns of MiRNA Interaction based on Sequence and Structure Similarity, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10(2): 415-422，2013 SCI(二区)，影响因子1. 54
7. 陈庆锋*，Yi-PingPhoebe Chen，Discovering Inhibition Pathways for Protein Kinases，IEEE Intelligent Systems，2012，27（5）：19-26。
8. 陈庆锋*, Chen YPP. Modeling Conserved Structure Patterns for Functional Noncoding RNA. IEEE Transactions on Biomedical Engineering, 58(6):1528-1533, 2011. SCI(二区), 影响因子 2.35
9. 陈庆锋*, Chen YPP, Function Annotation for Pseudoknot using Structure Similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(6), 1535-1544, 2011. SCI(二区), 影响因子1.54
10. 陈庆锋*，Chen YPP. Mining Protein Kinase Regulation using GraphicalModels. IEEE Transactions on NanoBioscience, 10(1): 1-8, 2011 SCI(三区),影响因子2.31
11. 陈庆锋*, Li G,YPP Chen. Interval-Based Distance Function for Identifying RNA Structure Candidates, Journal of Theoretical Biology, 269(8): 280-286, 2011. (SCI, 三区，影响因子 2.574)
12. 陈庆锋*，Zhang Shichao，Zhong Zhi，Dealing with inconsistent secure messages by weighting majority ,Knowledge-Based Systems，2011，24（6）：731-739。
13. 陈庆锋* ，Chen Baoshan，Efficient Strategies for SignallingPathway Mining，Current Protein & Peptide Science，2011，12（7）：589-590。
14. 陈庆锋*, Chen YPP, Mining characteristic relations bind to RNA secondary structures,IEEE Transactions on Information Technology Biomedicine. 14(1):10-15, 2010. (SCI, 三区，影响因子 2.2)
15. 陈庆锋*，Chen YPP. Discovery of Structural and Functional Features in RNA Pseudoknots, IEEE Transactions on Knowledge and Data Engineering, 21(7): 974-984, 2009. (SCI, 二区，影响因子 2.3)
16. 陈庆锋*, ChenYPP, Zhang CQ, Detecting Inconsistency in Biological Molecular Databases using Ontology, Data Mining and Knowledge Discovery, 15(2): 275-296, 2007. (SCI, 二区，影响因子 2.95)
17. 陈庆锋*, Chen YPP, Mining frequent patterns for AMP-activated protein regulation on skeletal muscle, BMC Bioinformatics, 7:394, 2006. (SCI, 三区，影响因子 3.62)
18. Lan, Wei，陈庆锋(*)，Li, Taoshen，Yuan, Changan，Mann,Scott，Chen, Baoshan，Identification of Important Positions within miRNAs by Integrating Sequential and Structural Features，Current Protein & Peptide Science，2014，15（6）：591-597。
19. Zhang, Shichao(*)，陈庆锋，Yang, Qiang，Acquiring knowledge from inconsistent data sources through weighting，Data & Knowledge Engineering，2010，69（8）：779-799。
20. 赵亮, Grant Guan. Efficient and accurate de novo assembly algorithm for paired-end reads and its application on indel calling. American Society of Human Genetics, San Diego, CA, USA, 18/10/2014-22/10/2014.
21. 赵亮, Limsoon Wong, Steven C.H. Hoi, Jinyan Li. Coupling graphs, efficient algorithms and application in bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014:11(1), pp 7-16.
22. 赵亮, Limsoon Wong, Lanyuan Lu, Steven C.H. Hoi, Jinyan Li. B-cell epitope prediction through a graph model, BMC Bioinformatics, 2012:13(17), p s20.
23. 赵亮, Steven C.H. Hoi, Limsoon Wong, Tobias Hamp, Jinyan Li. Structural and Functional Analysis of Multi-interface Domains. PLoS ONE, 2012:7(12), p e50821.
24. 赵亮, Limsoon Wong, & Jinyan Li.Antibody-Specified B-Cell Epitope Prediction in Line with the Principle ofContext-Awareness.IEEE/ACM Transactions on Computat- ional Biology andBioinformatics,2011:8(6),1483-1494.
25. 赵亮, Jinyan Li. Mining for the Antibody-Antigen Interacting Associations that Predict the B Cell Epitopes, BMC Structural Biology, 2010:10(1), p s6.
26. Quan Zhou, 赵亮, Yuntao Guan. Strong Selection at MHC in Mexicans since Admixture. PLoS Genetics, 2016:12(2)
27. Yin Pang，白琳*& Kaili Bu. An energy model for detecting community in PPI networks[C]. Database and Expert Systems Applications. 2015,Springer. pp:119-127.