Chen Q, Lan C, Li J, et al. Depth-First Search Encoding of RNA Substructures[M]// Intelligent Computing Theories and Application. Springer International Publishing, 2016.

Chen Q, Lan C, Chen B, et al. Exploring Consensus RNA Substructural Patterns using Subgraph Mining.[J]. IEEE/ACM transactions on computational biology and bioinformatics, 2016.

Chaowang Lan, Qingfeng Chen, Jinyan Li. Grouping miRNAs of similar functions via weighted information content of gene ontology[J]. 2016, 17.

Treatise: Chen QF, Zhang CQ, Zhang SC. Innovations in Security Protocol Analysis: Models and Application, LNCS 5111, Springer, 2008.

Edit special: Chen QF, Chen BS （eds）. Efficient Strategies for Signalling Pathway Mining，Current Protein Peptide Science， 12（7）：589-590,2011. (SCI, impact factor is 3.85)

Chen QF, Chen YPP, Mining Inhibition Pathways for Protein Kinases on Skeletal Muscle. IEEE Intelligent Systems, accepted, DOI 10.1109/MIS.2010.135, 2011. (SCI, imapct factor is 3.144)

Chen QF, Chen YPP, Function Annotation for Pseudoknot using Structure Similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(6),1535-1544., 2011. (SCI, imapct factor is 2.25).

Chen QF,Zhang SC,Zhong Z.（2011) Dealing with Inconsistent Secure Messages by Weighting Majority. Knowledge-Based Systems,24(6):731-739.

Chen QF, Li G, YPP Chen (2011) Interval-Based Distance Function for Identifying RNA Structure Candidates,Journal of Theoretical Biology, 269(8): 280-286. (SCI, impact factor is 2.574)

Chen QF，Chen YPP. Modeling Conserved Structure Patterns for Functional Noncoding RNA. IEEE Transactions on Biomedical Engineering,58(6):1528-33, 2011.(SCI, impact factor is 2.15)

Chen QF，Chen YPP. Mining Protein Kinase Regulation using Graphical Models. IEEE Transactions on NanoBioscience, 10(1):1-8，2011. (SCI, impact factor is 1.705)

Chen QF, Chen YPP, Mining characteristic relations bind to RNA secondary structures, IEEE Transaction Information Technology in Biomedicine. Jan, 14(1):10-15, 2010. (SCI, impact factor is 1.787)

Chen QF. Chen YPP. Discovery of Structural and Functional Features in RNA Pseudoknots, IEEE Transactions on Knowledge and Data Engineering (TKDE), 21(7): 974-984, 2009. (SCI, impact factor is 1.896)

Chen QF, Chen YPP, Zhang CQ, Detecting Inconsistency in Biological Molecular Databases using Ontology, Data Mining and Knowledge Discovery, 15(2): 275-296, 2007. (SCI, impact factor is 2.295)

Chen QF, Chen YPP, Mining frequent patterns for AMP-activated protein regulation on skeletal muscle, BMC Bioinformatics, 7:394, 2006. (SCI, impact factor is 3.62)

Qingfeng Chen, Chengqi Zhang, Shichao Zhang: ENDL: A Logical Framework for Verifying Secure Transaction Protocols. Knowl. Inf. Syst. 7(1): 84-109 (2005)